Quake: quality-aware detection and correction of sequencing errors

Detection and Correction of Accidental Semantic Errors

One of the most important characteristics of accidental errors to result from simple mistyping is that there is serious discrepancy between erroneous words and their surrounding context. To detect and correct these errors, contextual information such as n-gram or co-occurrence frequency is needed. However, despite these and other advances, detection and correction of accidental errors in agglut...

effect of seed priming and irrigation regimes on yield,yield components and quality of safflowers cultivars

این مطالعه در سال 1386-87 در آزمایشگاه و مزرعه پژوهشی دانشگاه صنعتی اصفهان به منظور تعیین مناسب ترین تیمار بذری و ارزیابی اثر پرایمینگ بر روی سه رقم گلرنگ تحت سه رژیم آبیاری انجام گرفت. برخی از مطالعات اثرات سودمند پرایمینگ بذر را بر روی گیاهان مختلف بررسی کرده اند اما در حال حاضر اطلاعات کمی در مورد خصوصیات مربوط به جوانه زنی، مراحل نموی، عملکرد و خصوصیات کمی و کیفی بذور تیمار شده ژنوتیپ های م...

Frame: detection of genomic sequencing errors

MOTIVATION The underlying error rate for genomic sequencing sometimes results in the introduction of artificial frameshifts and in-frame stop codons into putative protein encoding genes. Severe errors are then introduced into the inferred transcripts through mis-translation or premature termination. RESULTS We describe a system for screening segments of DNA for frameshift and in-frame stop er...

Correction of sequencing errors in a mixed set of reads

MOTIVATION High-throughput sequencing technologies produce large sets of short reads that may contain errors. These sequencing errors make de novo assembly challenging. Error correction aims to reduce the error rate prior assembly. Many de novo sequencing projects use reads from several sequencing technologies to get the benefits of all used technologies and to alleviate their shortcomings. How...

Context-Aware Correction of Spelling Errors in Hungarian Medical Documents